software sas version 8.1 Search Results


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ATCC vero cells
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
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Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
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SAS institute sas studio software
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
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Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
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Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
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SAS institute sas software 3.81
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
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Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
Software Studio 3.81, supplied by SAS institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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On Demand Pharmaceuticals mixed linear model procedure of sas® studio software, lts 3.81
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
Mixed Linear Model Procedure Of Sas® Studio Software, Lts 3.81, supplied by On Demand Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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SAS institute statistical analysis system (sas) software version 9.4
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
Statistical Analysis System (Sas) Software Version 9.4, supplied by SAS institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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SAS institute ondemand academics, version 3.81 software
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
Ondemand Academics, Version 3.81 Software, supplied by SAS institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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SAS institute sas proc glimmix
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
Sas Proc Glimmix, supplied by SAS institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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STATA Corporation version 12 0
Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, <t>Vero,</t> <t>Huh7.5.1,</t> HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.
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Image Search Results


Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, Vero, Huh7.5.1, HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.

Journal: Journal of Virology

Article Title: SFTSV utilizes AXL/GAS6 for entry via PI3K-PLC-dependent macropinocytosis activated by AXL-kinase

doi: 10.1128/jvi.00221-25

Figure Lengend Snippet: Genetic screening for cellular proteins involved in SFTSV entry. ( A ) Cell surface expression of DC-SIGN in HEK293, Vero, Huh7.5.1, HUVEC, and HEK293 DC-SIGN cells. HEK293 DC-SIGN : HEK293 cells expressing DC-SIGN are used as positive control. ( B ) SFTSV infection (MOI: 0.01) in various cells. Total cellular RNA was extracted at 24 hpi, and relative SFTSV RNA levels compared to those of HEK293 cells were measured using RT-qPCR. Data shown are mean + SD of three independent experiments. Significance in panel E was determined by t -test; NS, not significant; *** P < 0.001; **** P < 0.0001. ( C ) Scheme depicting genome-wide CRISPR activation screening for potential receptors involved in SFTSVpv infection. In brief, reporter cell populations were generated by infecting HEK293 cells stably integrated with the doxycycline-inducible dCas9-VPR gene with a CRISPRa-v2 lentiviral pooled library. Among these reporter cell populations, cells more susceptible to SFTSVpv bearing fluorescent protein reporter genes were sorted based on reporter protein expression upon infection. Unsorted cells infected with SFTSVpv were used as control cell populations. After three rounds of sorting, genomic DNAs were extracted from sorted and unsorted cells, and the integrated sgRNAs were analyzed by deep sequencing and MAGeCK software. ( D ) Confirmation of enrichment of cells susceptible to SFTSVpv after two rounds of sorting. Cells before sorting and those after first and second sortings were infected with SFTSVpv harboring crimson reporter gene at an MOI of 0.01, and expression of crimson was analyzed using flow cytometry at 72 hpi. ( E ) P -values were calculated from the three sorting rounds and unsorted groups by a negative binomial model using a modified distribution of RRA algorithm named alpha-RRA. Of the top 30 candidates, several membrane protein genes are shown.

Article Snippet: HEK293 and HEK293T cells (American Type Culture Collection; ATCC CRL-1573 and CRL-3216, respectively), Huh7.5.1 cells (human hepatocellular carcinoma; RRID CVCL-E049), Vero cells (monkey kidney; ATCC CRL-81), and their derivatives were cultured in DMEM with high glucose (Nacalai Tesque, Kyoto, Japan) containing 10% heat-inactivated FBS (Biowest, Bradenton, FL, USA) and 1% penicillin-streptomycin mixed solution (Nacalai Tesque).

Techniques: Expressing, Positive Control, Infection, Quantitative RT-PCR, Genome Wide, CRISPR, Activation Assay, Generated, Stable Transfection, Control, Sequencing, Software, Flow Cytometry, Modification, Membrane